On the Analysis track see section IV. Common Pathways for more examples and longer passages of these examples.
From Ya Shadi il-Alhan:
From Sihtu Wajdan, although the version here has two differences from the transcription presented in the article, including the use of Nahawand 5 in #11, and more significantly, the substitution of the less common Hijazkar and Nakriz in #16 and #17 for what in most other versions is usually Hijaz 5 (in place of #16) and Rast 1 or Sikah 3 (in place of #17), as I transcribed it. But I love Marie Jubran's version of the song more than others I had available, and I wanted to diversify the vocalists used on the site as much as I could, so I decided to include it.
From Hayrana Leh:
See Maqam Rast on the Demo Site, as well as the top of the Maqam Rast page on this site for illustrations of the network of ajnas making up Maqam Rast.
See section V. Alternate Pathways for more disussion of the Bayati Shuri example, as well as examples of alternate pathways in Maqam Ajam (not covered in the paper, but useful for understanding the discussion of Zanjaran there).
From the Muwashshah "Hibbi Da3ani lil-Wisaal:
From Mihtaar Ya Naas: